PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041040
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 809aa    MW: 88508 Da    PI: 5.8827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041040genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.3e-08748799146
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 
                           +++WT+ E+e l+++  ++     +Wk+I +  g    kgRt  ++k++w++
  PGSC0003DMP400041040 748 KLPWTKMEEETLKEGLLRFSHFhdRWKRILEFGGdvfqKGRTSGDLKDKWRN 799
                           689***************985499**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.15E-9385447IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-8385447IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.1E-5399444IPR001965Zinc finger, PHD-type
PROSITE patternPS013590400443IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.352743801IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.6E-8744802IPR009057Homeodomain-like
SuperFamilySSF466891.3E-7745801IPR009057Homeodomain-like
SMARTSM007170.0013747803IPR001005SANT/Myb domain
CDDcd116602.55E-10750802No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MVSLRVLESL FVQKNSDANS VASVPGDKVE LDPSRDCEDV LRCILLEVSA SNLKTATPDM  60
FKWDVLSFIM KKRSILPKCH LQQFKDAIVE STNPFSTSLK ERSGLELGNH YRDSGTADAI  120
DSDGFKQGHE IGGVNTRHAA PTENLDTSTQ GNKNGLQENQ PGSTLLPVKR SFNAPTAYEI  180
EVNKTKATPE KSSDPCAKAA KKFKQDVAGP IQNTVPDLIS SQRDGVPAES CGGSQSIVQK  240
RNSEDDGTLK ANGCLKDGKA KHAASASVLC GIDSSIKDLL PQRMSSDKKF QNIGSSSNCC  300
AELGTSSDSS LRVIQQDSRT CGSKGDLDYN LPRDLQNGEP SNADKENIEQ SRESEFSGDT  360
DECHNESTDL ASQKNDFLNL QYTQGEDSLA TVDCTELNLC VKCNEGENLL VCSSDTCSLV  420
VHESCLGSVP NFDYKGSFYC PFCAYSRAIS EYLEGKKKAS LARNDLAAFI RFGAGQQSKK  480
SLPRSQGMKK HQSQEDTIVQ LCHNVKGKNS LNEVTEAGSA PADRSSVGAQ VMQTSAPQPE  540
PSLPRNENER NSLNEITEAG SAPADRSSVR AQVMQTGAPQ PETSLPRNES GRNSLNEVRE  600
AGSAPADRSS VGAQVMQTGS PQPEASLPKQ CLVVGQQPDK SPLGCHRSRQ NQSREEEELC  660
HDENRNKNSL EKAEPGSRSV TRNSMRAEVT QIHPPQPHVP HEHVCQESSS IEVSSEEEQD  720
EIGSGYHVQF RNQENNSCPW IPQLRRKKLP WTKMEEETLK EGLLRFSHFH DRWKRILEFG  780
GDVFQKGRTS GDLKDKWRNI SKAGEKAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351323.10.0PREDICTED: uncharacterized protein LOC102589560
RefseqXP_006351325.10.0PREDICTED: uncharacterized protein LOC102589560
TrEMBLM1C6S90.0M1C6S9_SOLTU; Uncharacterized protein
TrEMBLM1C6T00.0M1C6T0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609730.0(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]