PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041041
Common NameLOC102589560
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 870aa    MW: 95197.7 Da    PI: 5.6112
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041041genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-08809860146
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 
                           +++WT+ E+e l+++  ++     +Wk+I +  g    kgRt  ++k++w++
  PGSC0003DMP400041041 809 KLPWTKMEEETLKEGLLRFSHFhdRWKRILEFGGdvfqKGRTSGDLKDKWRN 860
                           689***************985499**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.4E-8446508IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.26E-9446508IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002491.1E-5460505IPR001965Zinc finger, PHD-type
PROSITE patternPS013590461504IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.352804862IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-7805863IPR009057Homeodomain-like
SuperFamilySSF466891.47E-7806862IPR009057Homeodomain-like
SMARTSM007170.0013808864IPR001005SANT/Myb domain
CDDcd116602.82E-10811863No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MVSEALQQSF MATKLACTSS LPWIWVIEAL ASSSEIDASL LINLVKRTPE ISDDLGRNAR  60
EMVSLRVLES LFVQKNSDAN SVASVPGDKV ELDPSRDCED VLRCILLEVS ASNLKTATPD  120
MFKWDVLSFI MKKRSILPKC HLQQFKDAIV ESTNPFSTSL KERSGLELGN HYRDSGTADA  180
IDSDGFKQGH EIGGVNTRHA APTENLDTST QGNKNGLQEN QPGSTLLPVK RSFNAPTAYE  240
IEVNKTKATP EKSSDPCAKA AKKFKQDVAG PIQNTVPDLI SSQRDGVPAE SCGGSQSIVQ  300
KRNSEDDGTL KANGCLKDGK AKHAASASVL CGIDSSIKDL LPQRMSSDKK FQNIGSSSNC  360
CAELGTSSDS SLRVIQQDSR TCGSKGDLDY NLPRDLQNGE PSNADKENIE QSRESEFSGD  420
TDECHNESTD LASQKNDFLN LQYTQGEDSL ATVDCTELNL CVKCNEGENL LVCSSDTCSL  480
VVHESCLGSV PNFDYKGSFY CPFCAYSRAI SEYLEGKKKA SLARNDLAAF IRFGAGQQSK  540
KSLPRSQGMK KHQSQEDTIV QLCHNVKGKN SLNEVTEAGS APADRSSVGA QVMQTSAPQP  600
EPSLPRNENE RNSLNEITEA GSAPADRSSV RAQVMQTGAP QPETSLPRNE SGRNSLNEVR  660
EAGSAPADRS SVGAQVMQTG SPQPEASLPK QCLVVGQQPD KSPLGCHRSR QNQSREEEEL  720
CHDENRNKNS LEKAEPGSRS VTRNSMRAEV TQIHPPQPHV PHEHVCQESS SIEVSSEEEQ  780
DEIGSGYHVQ FRNQENNSCP WIPQLRRKKL PWTKMEEETL KEGLLRFSHF HDRWKRILEF  840
GGDVFQKGRT SGDLKDKWRN ISKAGEKAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351323.10.0PREDICTED: uncharacterized protein LOC102589560
RefseqXP_006351325.10.0PREDICTED: uncharacterized protein LOC102589560
TrEMBLM1C6T00.0M1C6T0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA340689
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]