PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041250
Common NameLOC102580843
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 170aa    MW: 18673.4 Da    PI: 8.9758
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041250genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.4e-42141131100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+C+++Cv++pyfp ++p+kfa vhk+FGasnv k+l++l+e +r da+ss+vyeA+ar++dP+yG+vg+i++lq+q+e 
  PGSC0003DMP400041250  14 PCAACKLLRRRCTQHCVFSPYFPGDEPHKFASVHKVFGASNVNKMLQELQEYQRGDAVSSMVYEANARMKDPIYGCVGTISSLQHQIEF 102
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+++la +++e
  PGSC0003DMP400041250 103 LHKQLAIAQAE 113
                           ******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3713114IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-4214111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKESGGRKQG ATSPCAACKL LRRRCTQHCV FSPYFPGDEP HKFASVHKVF GASNVNKMLQ  60
ELQEYQRGDA VSSMVYEANA RMKDPIYGCV GTISSLQHQI EFLHKQLAIA QAELVHMKMK  120
QFSSMSGGAG TATNLLGNVW SPPSRPLSSE VYSGFEVYGF LQQPQINIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-46101367129LOB family transfactor Ramosa2.1
5ly0_B1e-46101367129LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127921e-114AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence.
GenBankHG9754511e-114HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-114HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365826.11e-125PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE96e-60LBD4_ARATH; LOB domain-containing protein 4
TrEMBLM1C7B31e-124M1C7B3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000612831e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-62LOB domain-containing protein 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]