PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041307
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 216aa    MW: 23702.4 Da    PI: 10.1057
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041307genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.83.2e-15156202450
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                           +++ +r++kNRe+A rsR+RK+a++ eLe +v++L +eN +Lk + +
  PGSC0003DMP400041307 156 DQKSKRMIKNRESAARSRARKQAYTNELEMEVANLMEENARLKRQQQ 202
                           6799*************************************997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-10153215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.588155205IPR004827Basic-leucine zipper domain
PfamPF077168.4E-13156204IPR004827Basic-leucine zipper domain
CDDcd147072.14E-23157203No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-13158203No hitNo description
SuperFamilySSF579592.38E-11158204No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MWSSSNEEHQ GLNKNLATNS SKSSSSSSST SCSYNHPINP ILINSKTMEE VWKDINLSCS  60
RDPQNTTAGG IILQDLLARP FANNPSTAAA YGSPVPPLPP PPVTMLTLNS GPEFHFFSTL  120
NPIRQTQQKN ISNEGLASPA PGRKRHPESN NNNSGDQKSK RMIKNRESAA RSRARKQAYT  180
NELEMEVANL MEENARLKRQ QQQVTFYGLA KSFGV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-123HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361944.11e-148PREDICTED: bZIP transcription factor 27-like
SwissprotQ7PCC62e-31FDP_ARATH; bZIP transcription factor 27
TrEMBLM1C7F91e-157M1C7F9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000614031e-147(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.24e-28basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]