PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041308
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 192aa    MW: 20877.4 Da    PI: 10.3775
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041308genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.91e-08156178426
                           XCHHHCHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKka 26 
                           +++ +r++kNRe+A rsR+RK+ 
  PGSC0003DMP400041308 156 DQKSKRMIKNRESAARSRARKQV 178
                           6799*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001702.0E-6157179IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.13E-5158183No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-5158178No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MWSSSNEEHQ GLNKNLATNS SKSSSSSSST SCSYNHPINP ILINSKTMEE VWKDINLSCS  60
RDPQNTTAGG IILQDLLARP FANNPSTAAA YGSPVPPLPP PPVTMLTLNS GPEFHFFSTL  120
NPIRQTQQKN ISNEGLASPA PGRKRHPESN NNNSGDQKSK RMIKNRESAA RSRARKQVSF  180
YSLLIIKCII A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361944.11e-127PREDICTED: bZIP transcription factor 27-like
TrEMBLM1C7G01e-136M1C7G0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000614031e-126(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.12e-14basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]