PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041539
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 384aa    MW: 42887.2 Da    PI: 5.1342
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041539genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121050242
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          + en++ r v++ kR++g l KA EL +LCd+e a ++ s+
  PGSC0003DMP400041539 10 FMENNTERRVSYRKRQKGFLSKARELNTLCDVELATLVNSP 50
                          689********************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.044149IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-16160IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-18395IPR002100Transcription factor, MADS-box
CDDcd002661.35E-16359No hitNo description
PfamPF003193.7E-121154IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVRKKVKLAF MENNTERRVS YRKRQKGFLS KARELNTLCD VELATLVNSP YHNEPEVFPN  60
HEAATGMFTK FIDLPEEKKL KNMKTHEKIT EKRIEKIEKE LEKVRKENKK MEYTNQMYGL  120
LNGEEMPNSW HPEDLNDLCY VINKNLKLIT DGIKAKTHEE GSTSNAPQPI AAPMDSSGTS  180
FDMSWAPLLA PFDDPVLSEI PLLVSSTVPS GTNFERPRAP LNLVPDATPT SMVPLTAPLM  240
VPSNAPPQIP QFMFPLTTSP QMVPLVDLSQ VPSLLSSQRY PEMAYPILPT TMAYPIPSPM  300
ITPPMSNLVF PPTAPQIDPL MNIPSMSASV SMDNNVDGSL GIPQSPSFSE LLSLNDDEIM  360
TLLDDISFDI NVHDSNHHHH NNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RKKVKLAFMENNTERRVSYRKRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041539
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319833.10.0agamous-like MADS-box protein AGL65
TrEMBLM1C7X30.0M1C7X3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000617240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-20M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]