PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041540
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 328aa    MW: 36791.3 Da    PI: 6.6855
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041540genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121050242
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          + en++ r v++ kR++g l KA EL +LCd+e a ++ s+
  PGSC0003DMP400041540 10 FMENNTERRVSYRKRQKGFLGKARELNTLCDVELATLVNSP 50
                          689********************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.904149IPR002100Transcription factor, MADS-box
CDDcd002662.91E-16383No hitNo description
SuperFamilySSF554558.37E-18395IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-121154IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVRKKVKLAF MENNTERRVS YRKRQKGFLG KARELNTLCD VELATLVNSP YHNEPEVFPN  60
HEAATGMFTK FIDLPEEKKS KNMKTHEKIT EKRIEKIENE LEKLRKETKK MEYTNQMYGL  120
LNGEEITNSR HPEDLNDLCY VINKNLKLIN DGIKAKTHEE GSTSNASQPI AGPMDSSGTS  180
FDMSWAPLLA PFDAPVLSEI PFLVSSTVPC GTNFERPRAP LNLVPDVTPT SMVPLMAPLM  240
VPSNAPAQIP QFKFPLTTPP QMVPLVDLSQ VPSLLSSQRY PEMAYPILPT TMAYPMPSPM  300
ITPPMSNFSV SSNGTTNRPF DEYPLQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RKKVKLAFMENNTERRVSYRKRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319833.11e-156agamous-like MADS-box protein AGL65
TrEMBLM1C7X40.0M1C7X4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000617260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-25M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]