PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041615
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 224aa    MW: 23792.8 Da    PI: 8.913
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041615genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-093155226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          kt+lC  f     Ck+Gd+C+FaHg
  PGSC0003DMP400041615 31 KTRLCTKFNTAEGCKFGDKCRFAHG 55
                          8***********************9 PP
2zf-CCCH28.42.7e-09190214126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt++C +f +   C +G++C+FaHg
  PGSC0003DMP400041615 190 YKTKICENFTK-SSCTFGEKCHFAHG 214
                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.29E-82959IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0892957IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-42956IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-133060IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-73155IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.43E-1694172IPR004088K Homology domain, type 1
SMARTSM003222.0E-1399169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-16100170IPR004088K Homology domain, type 1
PROSITE profilePS5008414.592100164IPR004088K Homology domain, type 1
CDDcd001055.30E-16102164No hitNo description
PfamPF000131.2E-11102166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-15187220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8188219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76189216IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6189215IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-7190214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLGSNPALPA APRNSIAPPS FPDGSSSLAV KTRLCTKFNT AEGCKFGDKC RFAHGDWELG  60
RPAAPLHEES HGMFQMHGRY GSRPETNPTG LGAAASFGSS ATAKISVDAS LAGRIIGKGG  120
VNSKQICRMT GAKFSIRDHE SDPNLRNIEL EGTIDQIEQA SRMVRELIQS VTTSAGPPMK  180
NTSSSVTSNY KTKICENFTK SSCTFGEKCH FAHGAEELRK SGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041615
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461110.0AC246111.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-18b12 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356452.11e-163PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-75C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1C8361e-164M1C836_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000618291e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-55C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]