PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041646
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 244aa    MW: 27768.7 Da    PI: 7.7683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041646genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.6e-11196237346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            ++++E+ l+++  ++lG++ W++Ia +++ gR+ ++++ +w++
  PGSC0003DMP400041646 196 EFSEDEEALIIRMYNLLGKR-WSLIAGRIP-GRSTEEIVKYWNT 237
                           69******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF551591.44E-3361170IPR001950Translation initiation factor SUI1
Gene3DG3DSA:3.30.780.101.2E-4866170IPR001950Translation initiation factor SUI1
TIGRFAMsTIGR011601.0E-5269169IPR005874Eukaryotic translation initiation factor SUI1
PfamPF012532.2E-2586160IPR001950Translation initiation factor SUI1
CDDcd115664.46E-5087169No hitNo description
PROSITE profilePS5029624.51989159IPR001950Translation initiation factor SUI1
PROSITE profilePS5129410.498187243IPR017930Myb domain
SMARTSM007171.2E-9193241IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-9195237IPR009057Homeodomain-like
PfamPF002496.5E-10196237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-13196237IPR009057Homeodomain-like
CDDcd001671.00E-8196237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006413Biological Processtranslational initiation
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGDVFTKVGG EDEACRRLEF CIQGLFVVLL KARFMSELDI QVPTTFDENR LFLCFRVITD  60
WNNMACIMWT DPFADANAQN SGAGAKEYVH IRVQQRNGRK SLTTVQGLKK EFSYNKILKD  120
LKKEFCCNGT VVQDPELGQV IQLQGDQRKN VSTFLIQAGI VKKDNIKIHD SSEKISSSDY  180
FRADSQGKIL KEIETEFSED EEALIIRMYN LLGKRWSLIA GRIPGRSTEE IVKYWNTRSS  240
TSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ogh_A4e-337116910106Eukaryotic translation initiation factor eIF-1
2rvh_A4e-337116910106Eukaryotic translation initiation factor eIF-1
3j80_j4e-337116910106eIF1
3j81_m4e-337116910106eIF1
3jam_j4e-337116910106eIF1
3jap_m4e-337116910106eIF1
3jaq_m4e-337116910106eIF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably involved in translation.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041646
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-108HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-108HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234488.11e-70protein translation factor SUI1 homolog 1
RefseqXP_006343300.11e-70PREDICTED: protein translation factor SUI1 homolog 1
RefseqXP_019068251.11e-70protein translation factor SUI1 homolog 1
SwissprotP415685e-65SUI11_ARATH; Protein translation factor SUI1 homolog 1
TrEMBLM1C8620.0M1C862_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000618640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.14e-15MYB_related family protein
Publications ? help Back to Top
  1. Kim BH,von Arnim AG
    The early dark-response in Arabidopsis thaliana revealed by cDNA microarray analysis.
    Plant Mol. Biol., 2006. 60(3): p. 321-42
    [PMID:16514558]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]