PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041953
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 120aa    MW: 14025.2 Da    PI: 10.3559
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041953genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF916.1e-29959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien++ rqvtfskRrng+ KKA+ELSvLCdaeva iifs++g+l+e++s
  PGSC0003DMP400041953  9 KRIENSTSRQVTFSKRRNGLTKKAYELSVLCDAEVAFIIFSHKGRLFEFAS 59
                          79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-33387IPR002100Transcription factor, MADS-box
CDDcd002655.68E-44370No hitNo description
PRINTSPR004044.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003198.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVRGKVEMKR IENSTSRQVT FSKRRNGLTK KAYELSVLCD AEVAFIIFSH KGRLFEFASS  60
NMQKIIERYH ARARETMTVD KSTELEHYME AIHHLWIPIN NPVYGKSFLL NDRSQTFRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A6e-22371270Myocyte-specific enhancer factor 2A
3mu6_B6e-22371270Myocyte-specific enhancer factor 2A
3mu6_C6e-22371270Myocyte-specific enhancer factor 2A
3mu6_D6e-22371270Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041953
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133841e-125BT013384.1 Lycopersicon esculentum clone 135524R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362696.16e-60PREDICTED: MADS-box protein SOC1-like isoform X2
SwissprotQ9FIS12e-36AGL42_ARATH; MADS-box protein AGL42
TrEMBLM1C8W05e-84M1C8W0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000623198e-85(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.47e-39AGAMOUS-like 42
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]