PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042303
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 444aa    MW: 49689.5 Da    PI: 9.9617
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042303genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.93.4e-18731281171
               E2F_TDP  11 qkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           ++fl+l+ ++  +++ l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  PGSC0003DMP400042303  73 SRFLSLYDREGVETIGLDDAARRL---GV--ERRRIYDIVNVLESIGVLARKAKNRYSWKG 128
                           589*****9999************...**..****************************98 PP
2E2F_TDP74.41.2e-23210290171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                           r+eksL+lltq+f+kl+ +++ ++++l+e+ak L+ +      +++k+RR+YDi+NVL++++ iek     ++k+++rw g
  PGSC0003DMP400042303 210 RREKSLGLLTQNFVKLFLCTNVDMICLDEAAKILLGDgrppaMTRTKVRRLYDIANVLSSMRYIEKthhpdTRKPAFRWLG 290
                           689**************************************99999************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.6E-1768128IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.11E-1271126IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-1972129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-1573128IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-22207291IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.1E-30210290IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-17212290IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.17E-11212291IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAPKAEKKLA EQKPAATEEK EAEIASAGKK PKVGKKLPKK AGAAGADKKK TLLEATGWEI  60
IDREFRPRRF TFSRFLSLYD REGVETIGLD DAARRLGVER RRIYDIVNVL ESIGVLARKA  120
KNRYSWKGLG AIPRTLEQLK EEGLKENVSG FDGSSSAKSQ GSDDDEDDRD SNLITSSQTD  180
KLSSNSGVNS AAPVKSGKFA SLSPLSSENR REKSLGLLTQ NFVKLFLCTN VDMICLDEAA  240
KILLGDGRPP AMTRTKVRRL YDIANVLSSM RYIEKTHHPD TRKPAFRWLG LRGRSEYKSV  300
DAFCAIESKK RVFGTELTNT TIKRNRVALP MDGISDETTR KQLLTEVKCE NMENDFHIPK  360
QEPGLTASKK SYQFGPFAPP TIPQAEVSEA DRMKRVHDWE SLASSYRPQY HNQALKDLFA  420
HYVEAWKSWY LEVAGKNPIQ LIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-308728232228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12839KKPKVGKKLPKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345001.10.0PREDICTED: E2F transcription factor-like E2FE isoform X1
TrEMBLM1C9N00.0M1C9N0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-109DP-E2F-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]