PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042420
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 203aa    MW: 22354 Da    PI: 7.7543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042420genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.8e-062302355
                          HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55
                          Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  PGSC0003DMP400042420  2 LRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 30
                          89999998....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.591129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-12247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-5234No hitNo description
SuperFamilySSF474599.81E-9247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLRGIIPNSD QKRDKASFLL EVIEYIHFLQ EKVHKYEESY QGWDNEPPKL QLSKCHRTSH  60
GVSNLPQRII NGSAAALTYA GKFDESIMGI SSANPINVQK LEPNISSPSL KENRQQPGLT  120
NKPTTLPMHP NTFSFSGTSS TAALYSSKLT ADTDKLEPKS QSQFSLSRSH MTDYAIPNAN  180
PERQELPIES GTISISSAYS QG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345090.11e-144PREDICTED: transcription factor BIM1 isoform X1
TrEMBLM1C9Y91e-147M1C9Y9_SOLTU; Uncharacterized protein
TrEMBLM1C9Z01e-147M1C9Z0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000630261e-140(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-23BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]