PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042459
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 219aa    MW: 26052.8 Da    PI: 8.5752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042459genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063185205222
                           EETTTTEEESSHHHHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                            C  Cgk F++  +  +H ++
  PGSC0003DMP400042459 185 YCVVCGKKFKSEKQWINHEQS 205
                           5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.03E-13163214No hitNo description
SMARTSM004516.6E-4181215IPR003604Zinc finger, U1-type
PROSITE profilePS501578.559184213IPR007087Zinc finger, C2H2
PfamPF121711.7E-10184209IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280186208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MFWSWLLESV LVPLPFAAKL PLTDQPKPTA LSFLGITALS SEKRCFYAQV TAFYNYWLGF  60
ATVNDFCQED EYKLTLASDR NSRRMMEDVN KKLRKKAKRD YNVTVRGLAE FVKRRDKRVI  120
EMQIKRNEEL EKKNEAGRKR MEELEREKAD RVRNYVEPEW LRVEELQDGE IEEEQEEKGE  180
EKELYCVVCG KKFKSEKQWI NHEQSKKHKE NEKMAALR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098KKLRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042459
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163134.11e-132PREDICTED: dnaJ homolog subfamily C member 21-like
SwissprotQ9C9111e-54JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLM1CA161e-158M1CA16_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000630841e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-50DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]