PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042478
Common NameLOC102600332
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 518aa    MW: 58264.1 Da    PI: 4.3121
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042478genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07257304347
                           SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W++eE+el+ ++v    + lG++ W+  a +++  R +++++s+++++
  PGSC0003DMP400042478 257 KWSEEEEELFHEVVlsnpASLGNNFWNHLAIEFP-SRRREELVSYYFNV 304
                           8*************4444456777**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0018254307IPR001005SANT/Myb domain
PfamPF002491.8E-5257304IPR001005SANT/Myb domain
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MVQKRPYGEE DLYEVSSKQP RHEPSCQLVS VLELSRESVV VDAYASGGDE DNSSKIFPDA  60
NKKFDSHVVA EVLFSSEMGI HGSASNSSWP TSSTSEEDIR PEAPFHRLTS PEYYYFDHPF  120
RAAAHHREIY SSLLSNPQKM VPIGPDFQAE LPEWTPYSNK DKPCIEGIHE TLSPPSQANE  180
NKLTGRTIIP MPKMELLADQ VEIIGERRVE CSCEDKGSIR CVQLDVIEAR EKLKLALGEE  240
TFVRLGFCDM GEVVAEKWSE EEEELFHEVV LSNPASLGNN FWNHLAIEFP SRRREELVSY  300
YFNVFILRKR AEQNRFDPQN IDSDNDEWHD TVDDADEATK MTDEDEDSVV ESPAYHNGLS  360
YNMIHEEHDR RTYDEDAREA IWEDYKPVNF GSSKVFTDVQ ESCPSKFFDS NNSCKVGMQP  420
QDQGPSSNVV ESCTTDAAGV TSESSLGKTN NDNHWASDIA GMGSGTKHDS LLELCNGKEW  480
DGGYLSCARN EIGLVPTPTM IEEVFGDGAW IYKSRDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385680.0AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345156.10.0PREDICTED: uncharacterized protein LOC102600332
RefseqXP_015163209.10.0PREDICTED: uncharacterized protein LOC102600332
TrEMBLM1CA310.0M1CA31_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000631100.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]