PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400042525

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 314aa MW: 34164 Da PI: 9.8118

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400042525	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.7e-14	109	153	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky PGSC0003DMP400042525 109 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 153 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.605	102	158	IPR017930	Myb domain
SuperFamily	SSF46689	6.58E-17	104	158	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.9E-17	105	156	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-9	106	156	IPR001005	SANT/Myb domain
CDD	cd00167	1.87E-9	109	154	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-11	109	153	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-11	109	153	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MMMSSCCSQS GNDGHNSFTC AGDVSVGGGV GGGEIMLFGV RMKVDPMRKS VSLNNLSQYE 60 QPNSNDNNNS NSGNNNDSSK VAADEGYASA DDAVPHHSGS GRERKRGIPW TEEEHKLFLL 120 GLQKVGKGDW RGISRNFVKT RTPTQVASHA QKYFLRRTNL NRRRRRSSLF DITTDSVSVL 180 PTEETKNRQQ HSIPSLRHVE SSKMNAFQVT SMPVNFGPVM LPAEIEKPIL RQGSQSYYYN 240 GSSSIFLRPA PVVVPISNSS RIADFNLNQS SAMETSSLSL TLSLSSPSSS STRHSGFQVM 300 SSFNNGESII SVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400042525

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU560899	1e-162	EU560899.1 Capsicum annuum clone DEG202 MYB transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006344987.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	4e-97	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	M1CA69	0.0	M1CA69_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400063172	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	4e-55	MYB_related family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400042525

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]