PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042590
Common NameLOC102599677
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 178aa    MW: 20161.7 Da    PI: 9.7594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042590genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-163180255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ GVr+++ +grWvAeI++ s   ++ r +lg+f+ aeeAa a++ a++ l+g
  PGSC0003DMP400042590 31 KFIGVRQRP-SGRWVAEIKETS---QKLRLWLGTFDKAEEAALAYDSAARLLRG 80
                          899******.7******99942...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-313090No hitNo description
PROSITE profilePS5103219.3093188IPR001471AP2/ERF domain
PfamPF008471.0E-113180IPR001471AP2/ERF domain
SMARTSM003805.5E-323194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-273189IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-193188IPR016177DNA-binding domain
PRINTSPR003676.7E-73243IPR001471AP2/ERF domain
PRINTSPR003676.7E-75470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENSKSSSES LNNSSKNIQQ NKPISSNDGK KFIGVRQRPS GRWVAEIKET SQKLRLWLGT  60
FDKAEEAALA YDSAARLLRG RNAKTNFKNQ GILKPNEENC SLLEKNPRLY QLMKHAIMKK  120
LAGKYQNNER LETEEELVQE SINKEEICEI QLQGSSKVYS SVIVAPSFSN NEKSYQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-142987362ATERF1
3gcc_A4e-142987362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345066.11e-126PREDICTED: ethylene-responsive transcription factor CRF3-like
TrEMBLM1CAC81e-125M1CAC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000632641e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-18related to AP2 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]