PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042745
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 361aa    MW: 40364.1 Da    PI: 8.5727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042745genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05628123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C+ C+k F r  nL+ H r H
  PGSC0003DMP400042745  6 FICEVCNKGFQREQNLQLHRRGH 28
                          89*******************88 PP
2zf-C2H213.30.0002582104123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k +  +s+ k H +t+
  PGSC0003DMP400042745  82 WKCEKCSKKYAVQSDWKAHSKTC 104
                           58*****************9998 PP
3zf-C2H2110.0014112130523
                           TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                           dCg+ Fsr++++++H   +
  PGSC0003DMP400042745 112 DCGTIFSRRDSFVTHRAFC 130
                           8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-7528No hitNo description
Gene3DG3DSA:3.30.160.603.6E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
PfamPF121711.6E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551204777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTSN EIKKRVYICP ESSCIHHNPA  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTKEYK CDCGTIFSRR  120
DSFVTHRAFC DALAEENNKV NQVLATGTAG STQLAPELIS TTHMLNLPQI RNSNMKIPSI  180
PLNMAGSMFS SSSGFNQLGT NSSNMSSATA LLQQAAQMGA TVSNNMNSTL FNGVQIPIQS  240
DHDHDQNQTQ FGSILQGFGG SMLQNSGDDH HKSSRVLQNE HGWYNSHNNS NTGLFNEKQG  300
ILNKEAGHSN EESLTLDFLG IGGMRQRNLH EMHQQQQEMS FEQQEVSHQS IQGVNSIWDD  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3578143368Zinc finger protein JACKDAW
5b3h_F5e-3578143368Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344640.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLM1CAR60.0M1CAR6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000635010.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.13e-82C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]