PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042956
Common NameLOC102596082
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 152aa    MW: 16382.2 Da    PI: 10.651
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042956genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.61.1e-202155135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk++
  PGSC0003DMP400042956 21 CSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKKS 55
                          ********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-141555No hitNo description
SMARTSM004011.1E-161566IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.021551IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-171955IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-142071No hitNo description
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
PfamPF003201.3E-182154IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDPTQKEESS GSEATGISKS CSDCKTTKTP LWRSGPSGPK SLCNACGIKY RKKKSSPIGL  60
TKGATKKKEK PLSNSGSTEE VEYCKKGKIG NGKDGKLSKV LRVKLMMLGK EVVILQRQRS  120
SMKKPRNQRK LDEVERAAVL LMALSCGSVF G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042956
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385031e-139AC238503.9 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-10f3 map 1, complete sequence.
GenBankAC2389201e-139AC238920.12 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-222e21 map 1, complete sequence.
GenBankHG9755131e-139HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344726.11e-104PREDICTED: GATA transcription factor 17
TrEMBLA0A0V0HCG41e-102A0A0V0HCG4_SOLCH; Putative GATA transcription factor 17-like
TrEMBLM1CB781e-102M1CB78_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637711e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.11e-24GATA transcription factor 17
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]