PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042972
Common NameLOC102591375
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 232aa    MW: 25609.9 Da    PI: 7.2478
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042972genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.4e-192978149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                          k+i n+  r+vtfskRr g++KKA+EL++L++ae+a+++ s ++++l+++
  PGSC0003DMP400042972 29 KPITNQNSRHVTFSKRRLGLFKKASELCILTGAEIAIMVQSlKRQRLFTF 78
                          689************************************99567888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.0022169IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-242181IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-222293IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-102343IPR002100Transcription factor, MADS-box
PfamPF003191.8E-193178IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-104358IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNINNNTNAV NSAAVAVKKT QGRRKIAIKP ITNQNSRHVT FSKRRLGLFK KASELCILTG  60
AEIAIMVQSL KRQRLFTFGH PSADAVIDRY LTGKSEEEGV KSAGNDQFNY VQQSNEYYSQ  120
ICRELEAEKK VKEEIVIDES KMVNGGSNNG GGGFWWNEST DDMGIEELEK FMCALEELKK  180
KVNMRCDELS MINGSSSMAA AASTSSMNQA IDYCASIVPF DFNYPAGNAQ F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356276.11e-173PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1CB921e-172M1CB92_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637941e-172(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-25AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]