PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043066
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 138aa    MW: 15508.8 Da    PI: 9.0507
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043066genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17501251489
                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             + +p +f++++ +   +++t+tl+ +sg+s  v l++++++++    +t+GW +F ++n+Lk+gD+++F+ld++++
  PGSC0003DMP400043066  50 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCIFQLDRSKS 125
                           4689*********877..6679***************9999988888889***********************98743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1934124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1835123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-1736125No hitNo description
SMARTSM010199.3E-736129IPR003340B3 DNA binding domain
PROSITE profilePS5086310.88437137IPR003340B3 DNA binding domain
PfamPF023624.6E-1550125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MYISFGFDAL FLTSVEKRKL EGDQPHYQCM KGSSEFTARI KEYNVRKRSP YMHIPTEFCQ  60
SNALFQNTTM TLTGPSGKSC PVSLRICNGG KTLYACITRG WHDFFSSNKL KVGDVCIFQL  120
DRSKSDSNSI AIDVRVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-128HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356280.13e-88PREDICTED: B3 domain-containing protein REM9-like
TrEMBLM1CBG63e-99M1CBG6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000639321e-87(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]