PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043067
Common NameLOC102592826
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 256aa    MW: 28742 Da    PI: 9.8572
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043067genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.5e-1614102198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffkv+     + s  l++p  f+ + +g+k e+ t++   +   +W+v++  +++ ++ + + kGW+eFv+ ++L++gDf vF++ g++
  PGSC0003DMP400043067  14 FFKVM--VPGFHS-KLTIPPAFFPKLKGDKSEKGTII---KGKDTWNVEI--NRSEKGiISFDKGWEEFVQNHDLRVGDFAVFEHLGNM 94 
                           77888..445555.59**********77877766777...6779******..888888899**************************99 PP

                           EE..EEEEE- CS
                    B3  89 efelvvkvfr 98 
                           +f   v++++
  PGSC0003DMP400043067  95 SF--SVTLLD 102
                           99..777665 PP
2B353.15.8e-171682431489
                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             + +p +f++++ +   +++t+tl+ +sg+s  v l++++++++    +t+GW +F ++n+Lk+gD+++F+ld++++
  PGSC0003DMP400043067 168 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCIFQLDRSKS 243
                           4589*********877..6679***************9999988888889***********************98743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.33711104IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-1712106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1912106IPR015300DNA-binding pseudobarrel domain
CDDcd100174.35E-1512102No hitNo description
PfamPF023629.6E-1314100IPR003340B3 DNA binding domain
SMARTSM010192.0E-1214104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18152242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-17153241IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-16154243No hitNo description
SMARTSM010199.3E-7154247IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884155255IPR003340B3 DNA binding domain
PfamPF023622.4E-14169243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQSSSPELPI SRRFFKVMVP GFHSKLTIPP AFFPKLKGDK SEKGTIIKGK DTWNVEINRS  60
EKGIISFDKG WEEFVQNHDL RVGDFAVFEH LGNMSFSVTL LDSTGCDKKL LEKSEVVPSQ  120
EKKKKVKSGQ SGIEKRKLEG DQPHYQCMKG SSEFTARIKE YNVRKRSPYM HIPTEFCQSN  180
ALFQNTTMTL TGPSGKSCPV SLRICNGGKT LYACITRGWH DFFSSNKLKV GDVCIFQLDR  240
SKSDSNSIAI DVRVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-154HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356280.10.0PREDICTED: B3 domain-containing protein REM9-like
TrEMBLM1CBG70.0M1CBG7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000639320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-25B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]