PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043181
Common NameLOC102598839
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15869.1 Da    PI: 8.6258
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043181genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.1e-141562350
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          ++ k+n+  ++  R++ i  K  EL +LCd++v+ +i +++g+l++++
  PGSC0003DMP400043181 15 SNKKTNNPKSYQVRKECIKRKSMELATLCDIKVCTVITGPNGQLQTWP 62
                          67899******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.71E-15987IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.475961IPR002100Transcription factor, MADS-box
PfamPF003197.9E-101761IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADEDQSKKA KEDQSNKKTN NPKSYQVRKE CIKRKSMELA TLCDIKVCTV ITGPNGQLQT  60
WPDNLDACKE VLDLYSQNLK PEKKHKESST PVPEPEEEQG EKDLLTLVES KLTAVNRRIR  120
FLENKNVAIA DKGKRKIIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461051e-107AC246105.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-15l21 map 1, complete sequence.
GenBankHG9755131e-107HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349351.11e-97PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLM1CBP72e-96M1CBP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000640834e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.12e-11AGAMOUS-like 98
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]