PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043262
Common NameLOC102592166
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 213aa    MW: 23375.6 Da    PI: 6.4979
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043262genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.73.3e-322103197
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA  r+ +Pv+Gavg++++++
  PGSC0003DMP400043262   2 SCNGCRVLRKGCSDNCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGN 90 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelall 97 
                           ++++q+++e++l+
  PGSC0003DMP400043262  91 WHVCQAAVETVLR 103
                           *******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.1561107IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-272101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASVEI  120
DEVSDCTDVF KLQDPRKMQK RRRFPEETSM LADLDLSLTP GFNQKVYNSH PLPENHRRPG  180
TPSMNSEESG TTTCFESTAV IGEEPKLLSL FN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043262
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265161e-150AC226516.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0053H21, complete sequence.
GenBankHG9755141e-150HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339815.11e-158PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN111e-79LBD37_ARATH; LOB domain-containing protein 37
TrEMBLM1CBV81e-157M1CBV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641851e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-82LOB domain-containing protein 37
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]