PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400043263

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 160aa MW: 17602 Da PI: 4.9631

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400043263	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.2	3.5e-11	9	50	56	97
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++++sl+yeA r+ +Pv+Gavg++++++++++q+++e++l+ PGSC0003DMP400043263 9 ALFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVETVLR 50 689*********************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.2E-7	9	48	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MIFVYLLAAL FQSLLYEAAG RTVNPVNGAV GLLWTGNWHV CQAAVETVLR GGALRPISEF 60 LGASVEIDEV SDCTDVFKLQ DPRKMQKRRR FPEETSMLAD LDLSLTPGFN QKVYNSHPLP 120 ENHRRPGTPS MNSEESGTTT CFESTAVIGE EPKLLSLFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400043263

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226516	1e-159	AC226516.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0053H21, complete sequence.
GenBank	HG975514	1e-159	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339815.1	1e-109	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9FN11	1e-33	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	M1CBV9	1e-115	M1CBV9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400064185	1e-108	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	6e-36	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400043263

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]