PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043321
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 275aa    MW: 30570.9 Da    PI: 10.5989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043321genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.12.4e-10253272322
                           -SS-EEEEEEE--TT-SS-E CS
                  WRKY   3 DgynWrKYGqKevkgsefpr 22 
                           D y+WrKYGqK++kgs++pr
  PGSC0003DMP400043321 253 DDYSWRKYGQKPIKGSPHPR 272
                           99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.4E-18203249IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.5E-10239272IPR003657WRKY domain
PROSITE profilePS5081112.507246274IPR003657WRKY domain
SuperFamilySSF1182904.32E-8248273IPR003657WRKY domain
PfamPF031069.6E-7253273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAVELMMDYR NNRNSTTNCI NFVAKLEEKS VVQEAASGLE SVEKLIRLLS QTQSQQIQQR  60
NKSPMEIEMV ADAAVTKFKK VISLLDRNRT GHARFRRAPL ASANPLPMNS SKDFVDTKVY  120
SPTPIQQVPL INYDHFNPLV PKTISFSYSP EMSRTNSFNI SSLTGETESK QHSSSNSAFQ  180
ITNLSSQVSN SAGKPPLSSS SLKRKCSLSE NAVSGKCSGS SGRCHCSKRR KLRLKRVVRV  240
PAISMKLSDI PPDDYSWRKY GQKPIKGSPH PRYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043321
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339860.10.0PREDICTED: probable WRKY transcription factor 7
TrEMBLM1CC120.0M1CC12_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000642560.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.23e-42WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]