PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043420
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 253aa    MW: 28089.2 Da    PI: 6.3416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043420genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.7e-07140180954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            + R +++ +++ +L++l+ +      +K + a++L +A+eYIk L
  PGSC0003DMP400043420 140 AKVRKEKMGDRITTLQQLVSPF-----GKTDTASVLSEAIEYIKFL 180
                           5789999*************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.462131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-5135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.05E-7138184No hitNo description
SuperFamilySSF474591.83E-12140200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-9141202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGLGLTSQPH DWNHQSLLNY EDSSSQMNIR GFSLDQNNSI FSHSSNYEVV DNHQVLHSST  60
TNSWSKFPQF LRTSPSSEQP PLPPPAPPLP PPHSQLHFSN NTPFWNASAA SMTDVPSSLF  120
PSNLNNIPQL PNNTTIDEKA KVRKEKMGDR ITTLQQLVSP FGKTDTASVL SEAIEYIKFL  180
HDQIGVLSAP YMESGASMQH LQSDIKSEDV REGRNKDLRS RGLCLVPISS TFPVTHETNV  240
DLWTPTFGST FR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331221e-142AC233122.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-12d17 map 10, complete sequence.
GenBankAC2401921e-142AC240192.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-107b5 map 10, complete sequence.
GenBankAC2402241e-142AC240224.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-61e6 map 10, complete sequence.
GenBankHG9755221e-142HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362967.20.0PREDICTED: transcription factor bHLH123-like isoform X2
TrEMBLM1CCA70.0M1CCA7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000643991e-165(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-53bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]