PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043483
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 260aa    MW: 29717.5 Da    PI: 5.4361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043483genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.55.2e-2351392128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvkaeek...ewyfFskrdkkyatgkrknr.atk 79 
                           + GfrF+Ptd e v  +L + ++gk ++ + +  ++vd y+  ePwd+ +     + + +++   ++ fF+++ kk+ +++r +r + +
  PGSC0003DMP400043483   5 QEGFRFSPTDAEAV-TFLLRFIAGKFMDDSGFiTTHVDTYSKqEPWDIYThgvpcCNDDDDNdcsQYRFFITKLKKK-SKSRYSRdVGN 91 
                           68************.89999*****999988834566877544*****73467753333444342334666666655.56788886889 PP

                   NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +g Wk++ k+k+v +++g ++g kk++ +  ++  k e+ +W+m+ey l
  PGSC0003DMP400043483  92 KGSWKQQDKSKPVRKNGGPVIGYKKSMCYM-NKGYKQENGHWLMKEYDL 139
                           *****************************9.56666689********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-213161IPR003441NAC domain
PROSITE profilePS5100524.1884162IPR003441NAC domain
PfamPF023654.0E-146139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENLQEGFRF SPTDAEAVTF LLRFIAGKFM DDSGFITTHV DTYSKQEPWD IYTHGVPCCN  60
DDDDNDCSQY RFFITKLKKK SKSRYSRDVG NKGSWKQQDK SKPVRKNGGP VIGYKKSMCY  120
MNKGYKQENG HWLMKEYDLS TYILDKFGKD CRDIVLCAIK KRTRTKGTMK LMNVVPEECT  180
NLEDQSSAAT VESTSFTEGL QGWGVEYMPQ LELQNDMHEG TSNFVEPLSA PYTFDAASML  240
DFDYQYLPAD FDCLRSITA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169695.11e-161PREDICTED: NAC domain-containing protein 78-like
TrEMBLM1CCG80.0M1CCG8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000644990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-12NAC domain containing protein 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]