PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043872
Common NameLOC102601547
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 193aa    MW: 20608.9 Da    PI: 4.4911
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043872genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-153583255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++G+r++  +g+Wv+eIr+p++   ++r++lg+f  +e+Aa a++ a+++l+g
  PGSC0003DMP400043872 35 NFRGIRQR--NGKWVSEIREPRK---TTRIWLGTFPNPEMAAVAYDVAALALKG 83
                          589**975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.93E-303492No hitNo description
PfamPF008471.7E-83483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-273592IPR001471AP2/ERF domain
PROSITE profilePS5103219.8493591IPR001471AP2/ERF domain
SMARTSM003801.1E-293597IPR001471AP2/ERF domain
PRINTSPR003671.7E-63647IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-183692IPR016177DNA-binding domain
PRINTSPR003671.7E-67393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MADYHFNVSP NDNSPPLENL SPTGGTLLSP RRHPNFRGIR QRNGKWVSEI REPRKTTRIW  60
LGTFPNPEMA AVAYDVAALA LKGPDAQLNF PDCAYSYPIP ASLSAADIRA AAANAAAARA  120
PPLSEFSTAG GTAAAAAGGG QEFVDEEEIF GMPKLLDDMA EAMLVSPPRM HQSTSYDESP  180
ENSDADSLWS YP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340524.11e-139PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ902e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM1CDC21e-138M1CDC2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000650671e-138(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-41ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]