PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043926
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 160aa    MW: 17809.1 Da    PI: 6.9006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043926genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-071132627
                          -SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                          C+ f +tG C+ G++Ck +H++
  PGSC0003DMP400043926 11 CPVFEATGNCPKGSKCKLHHPK 32
                          *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-5530IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568533IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MQCQKKHTYV CPVFEATGNC PKGSKCKLHH PKNRRKGVKR KALSELKNGR GRYFGSPHID  60
ITECITAGSE KPSVKGNNDI FLEGKFIDFI GLDGSDEEEQ TIDQRSEEKP LCESGPAEMQ  120
LDDLDELIKP MRLINRNRSV GSSPYIDSPS DMTTSYVSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357327.11e-104PREDICTED: uncharacterized protein LOC102595922 isoform X2
RefseqXP_015168862.11e-104PREDICTED: uncharacterized protein LOC102595922 isoform X1
RefseqXP_015168863.11e-104PREDICTED: uncharacterized protein LOC102595922 isoform X3
RefseqXP_015168864.11e-104PREDICTED: uncharacterized protein LOC102595922 isoform X4
TrEMBLM1CDG61e-114M1CDG6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000651471e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA756855
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]