PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044029
Common NameLOC102578635
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 217aa    MW: 23343.2 Da    PI: 4.8677
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044029genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.14e-40581571100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+l+r+Cak+Cvlap fp +++ +f  vh+++Gasnv+k l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q++ 
  PGSC0003DMP400044029  58 SCAACKFLGRNCAKSCVLAPWFPPNDTINFTTVHRVYGASNVIKSLQELPESQRADAVSSMVYEANARLRDPVYGCAGSIFHLQKQVSD 146
                           6**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+a+la++++e
  PGSC0003DMP400044029 147 LQAQLAKAQAE 157
                           *******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.29257158IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3958155IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEYSSTNYPP SPLPLPSPSS SAVSSSSSSP NSPPTDLPPA VTSLPSSSRY VFSPVTSSCA  60
ACKFLGRNCA KSCVLAPWFP PNDTINFTTV HRVYGASNVI KSLQELPESQ RADAVSSMVY  120
EANARLRDPV YGCAGSIFHL QKQVSDLQAQ LAKAQAEIVN MQCQQAHLLE LICMEMGQSP  180
QAISPPQQSL DNFTHNIPMS FLDDDNSGSV WEALWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-395918312126LOB family transfactor Ramosa2.1
5ly0_B7e-395918312126LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366412.11e-158PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR09e-62LBD1_ARATH; LOB domain-containing protein 1
TrEMBLM1CDQ61e-156M1CDQ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000652971e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-62LOB domain-containing protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]