PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044063
Common NameLOC102603810
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 106aa    MW: 11764.3 Da    PI: 3.9206
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044063genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26040.96.1e-1314061100
                DUF260  61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                           +vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++e
  PGSC0003DMP400044063   1 MVYEANARLRDPVYGCAGAICQLQKQVNELQVQLAKAQAE 40 
                           69*********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031955.4E-11138IPR004883Lateral organ boundaries, LOB
PROSITE profilePS508919.419141IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MVYEANARLR DPVYGCAGAI CQLQKQVNEL QVQLAKAQAE VVNMQCEQAN FMTLFCMEMT  60
QSPQASPPQQ SLDNFTNIPQ YGGSQNNMSI LDENNVGSIW ETLWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754456e-88HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755186e-88HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343464.12e-73PREDICTED: LOB domain-containing protein 1-like
TrEMBLM1CDT54e-72M1CDT5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000653467e-73(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-22LOB domain-containing protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]