PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044064
Common NameLOC102603810
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 210aa    MW: 22770.7 Da    PI: 4.906
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044064genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.48.6e-42451441100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++
  PGSC0003DMP400044064  45 PCAACKILRRRCADKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNE 133
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+++la++++e
  PGSC0003DMP400044064 134 LQVQLAKAQAE 144
                           ******99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.76544145IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-4245142IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MESSSDTTTA TTITSSPPSS RSVSPSSSSP PNSPPSPQVA VVVSPCAACK ILRRRCADKC  60
VLAPYFPPND PIKFTTAHRV FGASNIIKFL QELPEFQRAD AVSSMVYEAN ARLRDPVYGC  120
AGAICQLQKQ VNELQVQLAK AQAEVVNMQC EQANFMTLFC MEMTQSPQAS PPQQSLDNFT  180
NIPQYGGSQN NMSILDENNV GSIWETLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-434415210118LOB family transfactor Ramosa2.1
5ly0_B4e-434415210118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044064
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-115HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343464.11e-154PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-67LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK082e-67LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM1CDT51e-152M1CDT5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000653461e-153(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-64LOB domain-containing protein 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]