PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044186
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 201aa    MW: 22852.4 Da    PI: 8.6652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044186genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.7e-10162191135
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgk 35 
                           s+y+GV++++++grW+++I+d      + k+++lg+
  PGSC0003DMP400044186 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGT 191
                           78*******************......55******8 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MWNLNDSPDH RRDYEGKGVE RSISNSSSSA VEELYGSEEE DEFLEQNGLK GKKKKSIPSK  60
IFGFSMIAPP NNNNDDNLSS ESEPPVTRQF FPVDESEIGS GNFNDRSCRF PRAHWAGVKF  120
YQPEPSTAVL GKGSELSQVQ VQVQVQVQPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG TVFFFHLFLS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360214.11e-137PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
TrEMBLM1CE441e-146M1CE44_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655011e-136(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-25AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]