PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044419
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 467aa    MW: 50756.5 Da    PI: 5.5401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044419genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-1563107147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT+eE++++++a k++G   W+ I +++g  +t+ q++s+ qk+
  PGSC0003DMP400044419  63 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 107
                           789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.65E-1657112IPR009057Homeodomain-like
PROSITE profilePS5129420.98258112IPR017930Myb domain
TIGRFAMsTIGR015573.1E-1761110IPR006447Myb domain, plants
SMARTSM007173.6E-1262110IPR001005SANT/Myb domain
PfamPF002491.7E-1263106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-863103IPR009057Homeodomain-like
CDDcd001673.88E-965108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVADAVYAFF TIPQNQVEGA QQGASSMISS KLETVATQGK APTCLANENV LKARKPYTIT  60
KQREKWTEEE HQRFLEALKL YGRAWRQIEE YVGSKTAIQI RSHAQKFFAK IARDSGNDGD  120
ESLNAIDIPP PRPKKKPLHP YPRKIADSSV ANKAVSGQPE RSPSPNASGR DSCSPDSVLP  180
AIGLGASEYS AAEQQNSRFS PVSCTTDAHT ANVISAENDD ESMSSNSNTV EEIHVALKPV  240
AASTCPITNS EFMECDIVHM ENSCNGEKLA VEPPSASIKL FGKTVFVPDA NNLAPPALYN  300
TEKEIKISNE DVLHAFQANQ ANSPFILAMV PGNMIPPASW LSQNKLENNP ESTAAFPAAT  360
ISWWSWYQDL IYRSISSCGQ TAMETAAHYQ RPKDEESQRE GSSTGSSIGS ASEVDDGNRS  420
SETVESKCTT KSKGFVPYKR CLAERDGKPA GAVLEERESQ RVRVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044419
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518040.0AC151804.1 Solanum demissum chromosome 5 clone PGEC475B22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071307.10.0uncharacterized protein LOC107015511 isoform X1
TrEMBLM1CEP70.0M1CEP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000658500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-36MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]