PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044420
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 459aa    MW: 49788.4 Da    PI: 5.5401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044420genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-155599147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          r +WT+eE++++++a k++G   W+ I +++g  +t+ q++s+ qk+
  PGSC0003DMP400044420 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 99
                          789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.5E-1649104IPR009057Homeodomain-like
PROSITE profilePS5129420.98250104IPR017930Myb domain
TIGRFAMsTIGR015573.1E-1753102IPR006447Myb domain, plants
SMARTSM007173.6E-1254102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-85595IPR009057Homeodomain-like
PfamPF002491.7E-125598IPR001005SANT/Myb domain
CDDcd001673.75E-957100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MVADAVNQVE GAQQGASSMI SSKLETVATQ GKAPTCLANE NVLKARKPYT ITKQREKWTE  60
EEHQRFLEAL KLYGRAWRQI EEYVGSKTAI QIRSHAQKFF AKIARDSGND GDESLNAIDI  120
PPPRPKKKPL HPYPRKIADS SVANKAVSGQ PERSPSPNAS GRDSCSPDSV LPAIGLGASE  180
YSAAEQQNSR FSPVSCTTDA HTANVISAEN DDESMSSNSN TVEEIHVALK PVAASTCPIT  240
NSEFMECDIV HMENSCNGEK LAVEPPSASI KLFGKTVFVP DANNLAPPAL YNTEKEIKIS  300
NEDVLHAFQA NQANSPFILA MVPGNMIPPA SWLSQNKLEN NPESTAAFPA ATISWWSWYQ  360
DLIYRSISSC GQTAMETAAH YQRPKDEESQ REGSSTGSSI GSASEVDDGN RSSETVESKC  420
TTKSKGFVPY KRCLAERDGK PAGAVLEERE SQRVRVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518040.0AC151804.1 Solanum demissum chromosome 5 clone PGEC475B22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071307.10.0uncharacterized protein LOC107015511 isoform X1
TrEMBLM1CEP80.0M1CEP8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000658500.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-36MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]