PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044597
Common NameLOC102590299
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 218aa    MW: 23714.8 Da    PI: 7.3755
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044597genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260971.9e-302103197
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l++++e++r+++++sl++eA+ r+ +Pv+Gavg++++++
  PGSC0003DMP400044597   2 SCNGCRILRKGCNENCILRQSLqgiesPHAQANATVFVAKFFGRAGLMSFLTSVSESQRPALFQSLLFEACGRTVNPVHGAVGLLWTGN 90 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelall 97 
                           ++++q+++e++l 
  PGSC0003DMP400044597  91 WHVCQSAVETVLK 103
                           *******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6361107IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLTSVSESQR  60
PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTASP  120
EFDSEANDVD LFRSQSSNFQ SKRKIIDEVS EDLDLGLTSG LSTMVTGGKL NRRTEKRRAA  180
TPSLNSDESD TTTLESGVVY HQNPQQGNET KLLRLFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346321.11e-160PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN117e-66LBD37_ARATH; LOB domain-containing protein 37
TrEMBLM1CF431e-159M1CF43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661651e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-68LOB domain-containing protein 37
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]