PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044612
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-PHD
Protein Properties Length: 579aa    MW: 63075.3 Da    PI: 4.5485
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044612genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.32.3e-12338390355
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           kR t+ +  +++L e F+ n+yp+++++ +L k+lgLt  qV+ WF N R  +
  PGSC0003DMP400044612 338 KRKTHGEVATKRLYESFKDNQYPDRDAKGKLGKELGLTAYQVSKWFENARHCH 390
                           7888899999***************************************9755 PP
2PHD36.11.5e-125491051
                          TTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                   PHD 10 eegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51
                          ++++++lCdg C++ fH+ C++++l +e++p +   wlC+ C++k
  PGSC0003DMP400044612  5 ADNDIILCDGaCERGFHQLCVEPPLLKEDIPPDdeGWLCPGCDCK 49
                          589******66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.938149IPR019787Zinc finger, PHD-finger
PfamPF006282.4E-9549IPR019787Zinc finger, PHD-finger
SuperFamilySSF579032.44E-9552IPR011011Zinc finger, FYVE/PHD-type
CDDcd155041.31E-22646No hitNo description
Gene3DG3DSA:3.30.40.102.9E-9649IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002490.008747IPR001965Zinc finger, PHD-type
Gene3DG3DSA:1.10.10.603.1E-12330387IPR009057Homeodomain-like
PROSITE profilePS5007112.876333393IPR001356Homeobox domain
SuperFamilySSF466894.71E-12334397IPR009057Homeodomain-like
SMARTSM003892.4E-10335397IPR001356Homeobox domain
CDDcd000868.08E-11338394No hitNo description
PfamPF000468.6E-10338391IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDLPADNDII LCDGACERGF HQLCVEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ  60
GTDLSVTDSW EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPETPDV GKNDSEDESS  120
SDESDFYSAS EDLAEAPPKD DEILGISSED SEDDDFNPDD PDKDEPVKTE SSSSDFTSDS  180
EDFNLIVDTN RLQGDEQGVS SSVDNSMPNS ASQEEKAKVG KAKGNSLKDE LSYLMQSDSP  240
LVSAKRHIER LDYKKLHDET YGNGSSESSD EDYDDGPLPK VRKLRNAKGA MTSPSSTPAD  300
IKHQSGKQKG SGRASDSGIS EKLKVGGAGT SESPSSGKRK THGEVATKRL YESFKDNQYP  360
DRDAKGKLGK ELGLTAYQVS KWFENARHCH RHSSHWNTIM SQKVSKESPS KLQIIGEPLG  420
TESNSIIAFC NGVGKLEQPK QRLNGEKGHA IDKSEEDLFI QDASGKKSSE PTKKVYTTNQ  480
GSEDTPRNKT SKKQKAKVGT ANSQNDNTTE QASDDTPCNK TSKKHKAKVG TANSQNDNTT  540
DQGLDDTPQS KTRKKPTVRV DTPNSQNVRR SSRLQKQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337341KRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346339.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_006346341.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_006346342.10.0PREDICTED: pathogenesis-related homeodomain protein
TrEMBLM1CF560.0M1CF56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.18e-39Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]