PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044696

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 215aa MW: 24306.9 Da PI: 6.8858

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044696	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.3e-16	35	121	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k +++s+v+ +l+lp+ f++ h+ ++ ++t+tl des ++++ k+ ++++ l++GW++F +++L egD++vF+l + + PGSC0003DMP400044696 35 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLSHDLVEGDVLVFQLFRFCK 117 89*******************9997..56889************555555....9********************865333 PP E..EEE CS B3 90 felvvk 95 +v PGSC0003DMP400044696 118 L--KVY 121 3..444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-18	28	126	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-22	30	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.54E-24	33	124	No hit	No description
Pfam	PF02362	1.2E-13	35	123	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.617	35	126	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-17	35	126	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAMMHNLYGQ IDLATSAKYR AEEVLSRLST KYPSFMKPMI RSNVSGGFWL SLPRLFCQLH 60 MPRHDITVTL VDESQEEYKT KYLAERNGLS GGWRGFSLSH DLVEGDVLVF QLFRFCKLKV 120 YMVRANYLAE VDAALVLLHL DAHHKQIDPG LDYETLNIVD AVKASKLSDP PNGTFSSWNT 180 RPTQLEQLEI RPFSSGYSIE PALTLSGAEM VFRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044696

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-100	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-100	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346414.1	1e-150	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_006346415.1	1e-150	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_015163758.1	1e-150	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_015163759.1	1e-150	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
Swissprot	Q1G3M3	4e-42	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	M1CFC4	1e-159	M1CFC4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066312	1e-150	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044696

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]