PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044697

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 157aa MW: 18168.3 Da PI: 10.6105

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044697	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.7	7.9e-17	64	153	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k +++s+v+ +l+lp+ f++ h+ ++ ++t+tl des ++++ k+ ++++ l++GW++F +++L egD++vF+l + + PGSC0003DMP400044697 64 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLSHDLVEGDVLVFQLFRFCK 146 89*******************9997..56889************555555....9********************875344 PP E..EEEEE- CS B3 90 felvvkvfr 98 l+v++++ PGSC0003DMP400044697 147 --LKVRIRK 153 ..4888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.5E-19	57	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-22	59	153	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.20E-22	62	153	No hit	No description
Pfam	PF02362	2.6E-14	64	153	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.674	64	155	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-18	64	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MKDRSLELKG WHKQVVCKKS KKRGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK 60 YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVR IRKSSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044697

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-110	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346414.1	1e-108	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_006346415.1	1e-108	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_015163758.1	1e-108	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Swissprot	Q1G3M3	6e-40	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	M1CFC5	1e-112	M1CFC5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066312	1e-108	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-42	B3 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044697

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]