PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044699

Common Name

LOC102592894

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 180aa MW: 20649.2 Da PI: 10.0592

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044699	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.9	2.8e-16	64	150	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k +++s+v+ +l+lp+ f++ h+ ++ ++t+tl des ++++ k+ ++++ l++GW++F +++L egD++vF+l + + PGSC0003DMP400044699 64 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLSHDLVEGDVLVFQLFRFCK 146 89*******************9997..56889************555555....9********************865333 PP E..EEE CS B3 90 felvvk 95 +v PGSC0003DMP400044699 147 L--KVY 150 3..454 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-18	57	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-22	59	155	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.37E-22	62	153	No hit	No description
Pfam	PF02362	7.9E-14	64	152	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.617	64	155	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-17	64	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKDRSLELKG WHKQVVCKKS KKRGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK 60 YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044699

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-101	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-101	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346414.1	1e-131	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_006346415.1	1e-131	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_015163758.1	1e-131	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Swissprot	Q1G3M3	5e-43	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	M1CFC6	1e-129	M1CFC6_SOLTU; Uncharacterized protein
TrEMBL	M1CFC7	1e-131	M1CFC7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066312	1e-130	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044699
Entrez Gene	102592894

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]