PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044703
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 228aa    MW: 25926.4 Da    PI: 6.5036
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044703genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-1618107198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k ++ps+v    +l lpk+f++ h   + +++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l++   
  PGSC0003DMP400044703  18 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSSDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSISHRLLKGDLLIFRLIEP-- 98 
                           889********************8884..34678****************888888....***********************9974.. PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                            +++v ++r
  PGSC0003DMP400044703  99 CKMKVYIVR 107
                           335777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2212109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1912109IPR015300DNA-binding pseudobarrel domain
CDDcd100177.04E-2216107No hitNo description
PfamPF023622.5E-1318107IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84318109IPR003340B3 DNA binding domain
SMARTSM010192.2E-1918109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MERAEKVLSR LPDEFPSFAK CMLPSNVAHG FWLHLPKSFC NMHLPSSDTT VILVDEWGNE  60
YKTSYLLERN GLSAGWRGFS ISHRLLKGDL LIFRLIEPCK MKVYIVRVNG QEVVDAALCL  120
MNWETLNTST ELDLVRKDNR KRKKAKHLAE PFFVDLSKPK EHVQNDSHCA VDLNVSPSEH  180
RSENNSEDLD SEVLEGSDVT NRLQSNEICC SETSFLHDNP HKSIACR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139143RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044703
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-111HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-111HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346416.11e-170PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
TrEMBLM1CFD01e-168M1CFD0_SOLTU; Uncharacterized protein
STRINGSolyc01g108130.2.11e-154(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-36B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]