PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044705
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 253aa    MW: 28873.6 Da    PI: 10.4774
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044705genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16125214198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k ++ps+v    +l lpk+f++ h   + +++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l++   
  PGSC0003DMP400044705 125 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSSDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSISHRLLKGDLLIFRLIEP-- 205
                           889********************8884..34678****************888888....***********************9974.. PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                            +++v ++r
  PGSC0003DMP400044705 206 CKMKVYIVR 214
                           335777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-19119216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-22119216IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-21123214No hitNo description
PfamPF023623.1E-13125214IPR003340B3 DNA binding domain
SMARTSM010192.2E-19125216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEERNFIPVK RRTKSCKKRQ QQVEPHRLKS TSHSSASTST QTDPLSMIKT VQLDRKKMIP  60
KKPRSVKSKA KQVKSNHPRK AESIKRKGSK RTRINDLYDD VEAKYSVMER AEKVLSRLPD  120
EFPSFAKCML PSNVAHGFWL HLPKSFCNMH LPSSDTTVIL VDEWGNEYKT SYLLERNGLS  180
AGWRGFSISH RLLKGDLLIF RLIEPCKMKV YIVRVNGQEV VDAALCLMNW ETLNTSTELG  240
NFVLSACPPL LL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-111HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-111HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346416.11e-177PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
RefseqXP_006346417.11e-178PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
TrEMBLM1CFD30.0M1CFD3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663211e-177(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-38B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]