PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044708

Common Name

LOC102594203

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 225aa MW: 25910.7 Da PI: 9.4418

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044708	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52	1.2e-16	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +++s+v+ +l lp +f+++h k + +tl de+g +++ k+ k++ l++GW++F+ +++L +gD +vF+l+ ++ PGSC0003DMP400044708 129 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--HDEYVTLVDENGDEFQTKYLALKTG----LSGGWRGFALDHELVDGDALVFQLVAPTR 211 89**********************433..3347***********666666....*********************998677 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v ++r PGSC0003DMP400044708 212 F--KVYIIR 218 7..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.2E-21	120	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.47E-25	122	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.25E-27	127	218	No hit	No description
Pfam	PF02362	5.0E-15	129	218	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-21	129	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.238	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAELKKKLTY EECRLKRIEE NKKRWQELKL TMLAEDVHNA TSPKPSPMKK VKPTVRQEVD 60 RSAVRRSNRV ADKPPPNYKE VLIEPLGRPR SYKRKDLLNR VYAADEDRQY AIGRAEQLQS 120 EFDADFPSFV KPMLQSHVTG GFWLGLPVHF CKTHLPKHDE YVTLVDENGD EFQTKYLALK 180 TGLSGGWRGF ALDHELVDGD ALVFQLVAPT RFKVYIIRVN QAED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044708

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-103	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346419.1	1e-167	PREDICTED: B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	1e-82	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	M1CFD6	1e-166	M1CFD6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066323	1e-167	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-81	B3 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044708
Entrez Gene	102594203

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]