PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044805
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 291aa    MW: 32329.3 Da    PI: 4.5681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044805genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-1177155989
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                            v ++++l++p + +++++++   +  ++++d+ gr++e kl+ +k  gr++l++GW++ ++ n ++  D ++ ++++   +
  PGSC0003DMP400044805  77 RVKRRDQLYIPIDVVRDYKLE--LPSRMIIRDSAGREFETKLKNWKD-GRIWLAGGWRSLCRWNLVEKDDRCICEFMRGkGK 155
                           58899*************888..6668***************76666.589*******************999998865344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-1465152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1466152IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.40569166IPR003340B3 DNA binding domain
CDDcd100175.08E-971155No hitNo description
SMARTSM010195.1E-472162IPR003340B3 DNA binding domain
PfamPF023621.4E-976158IPR003340B3 DNA binding domain
HamapMF_0039611.544254287IPR012595PetM of cytochrome b6/f complex subunit 7
SuperFamilySSF1034413.92E-9256287No hitNo description
PfamPF080417.3E-8257283IPR012595PetM of cytochrome b6/f complex subunit 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009512Cellular Componentcytochrome b6f complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEEEDEEEEE EDYDDDDDEE EEETEEDEET EEDERTVGGK RDTACKVRDV PDQYGADIFK  60
SGRATQPKNL YFVAKIRVKR RDQLYIPIDV VRDYKLELPS RMIIRDSAGR EFETKLKNWK  120
DGRIWLAGGW RSLCRWNLVE KDDRCICEFM RGKGKRGLYL QVGGQKTMAT MTTFSAATVS  180
SAAIIGTGRN SSQKGTKVKY ISGLNSFEGL KANNHVASLG LPMSTEQAFA KIVSSLKTPS  240
SQANGGALSS TCNAALEIFR IATIIPGLVL VGVAVGFVLL RIEATVEESE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044805
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384990.0AC238499.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence.
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1CFK60.0M1CFK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000664690.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-12B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]