PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044806
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 376aa    MW: 43793.9 Da    PI: 5.4595
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044806genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.8e-11280361992
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                            v ++++l++p + +++++++   +  ++++d+ gr++e kl+ +k  gr++l++GW++ ++ n ++  D ++ ++++   ++ l
  PGSC0003DMP400044806 280 RVKRRDQLYIPIDVVRDYKLE--LPSRMIIRDSAGREFETKLKNWKD-GRIWLAGGWRSLCRWNLVEKDDRCICEFMRGkGKRGL 361
                           58899*************888..6668***************76666.589*******************999998765344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1280175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-1381175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.97984181IPR003340B3 DNA binding domain
SMARTSM010190.187179IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.601.104.3E-5183259No hitNo description
Gene3DG3DSA:2.40.330.102.4E-14268368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-14269368IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.221272371IPR003340B3 DNA binding domain
SMARTSM010195.1E-4275365IPR003340B3 DNA binding domain
PfamPF023621.6E-9279364IPR003340B3 DNA binding domain
CDDcd100171.46E-7281368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGKNFVKIGK APRSKHRHAE ETEEEEYEDE EEEEEQNEWA GIVEKNASCS KAGYQRATAR  60
KVRDSHDQFG ADIFKSGHAT RPRNPYFIAK LQAKRRDQLY VPIDVIKGFN FELPSSITIR  120
DSTGREFETK LKNWKDGRIW LIGGWHSLCR WNLVEKDVKC ICEFVKGKGN KVLYLQVQIL  180
HEGSVSNSNT KHMEEEDEEE EEEDYDDDDD EEEEETEEDE ETEEDERTGT FKKNVSHSKV  240
GGKRDTACKV RDVPDQYGAD IFKSGRATQP KNLYFVAKIR VKRRDQLYIP IDVVRDYKLE  300
LPSRMIIRDS AGREFETKLK NWKDGRIWLA GGWRSLCRWN LVEKDDRCIC EFMRGKGKRG  360
LYLQVHVLHE GSVSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384991e-111AC238499.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence.
GenBankHG9755131e-111HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163791.10.0PREDICTED: glutamic acid-rich protein-like
TrEMBLM1CFK70.0M1CFK7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000664700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-12B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]