PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044807
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 184aa    MW: 21587.9 Da    PI: 4.5033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044807genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.4e-1288170993
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                            v ++++l++p + +++++++   +  ++++d+ gr++e kl+ +k  gr++l++GW++ ++ n ++  D ++ ++++   ++ l+
  PGSC0003DMP400044807  88 RVKRRDQLYIPIDVVRDYKLE--LPSRMIIRDSAGREFETKLKNWKD-GRIWLAGGWRSLCRWNLVEKDDRCICEFMRGkGKRGLY 170
                           68899*************888..6668***************76666.589*******************9999988653554454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1576176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1577176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.22180179IPR003340B3 DNA binding domain
SMARTSM010195.1E-483173IPR003340B3 DNA binding domain
PfamPF023623.6E-1087172IPR003340B3 DNA binding domain
CDDcd100173.36E-889176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEEEDEEEEE EDYDDDDDEE EEETEEDEET EEDERTGTFK KNVSHSKVGG KRDTACKVRD  60
VPDQYGADIF KSGRATQPKN LYFVAKIRVK RRDQLYIPID VVRDYKLELP SRMIIRDSAG  120
REFETKLKNW KDGRIWLAGG WRSLCRWNLV EKDDRCICEF MRGKGKRGLY LQVHVLHEGS  180
VSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-93HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163791.11e-106PREDICTED: glutamic acid-rich protein-like
TrEMBLM1CFK81e-130M1CFK8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000664701e-105(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-13B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]