PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044913

Common Name

LOC102591655

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 415aa MW: 45033.2 Da PI: 10.305

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044913	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.6	2.6e-13	336	388	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee.lkkev 56 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+k+ e ++++ PGSC0003DMP400044913 336 RRRRRMIKNRESAARSRARKQAYTLELEAEVAKLKKINEELRKKQAEiIENQK 388 689**************************************987544044444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.4E-11	332	397	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.795	334	383	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.56E-9	336	383	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-12	336	391	No hit	No description
Pfam	PF00170	3.7E-11	336	386	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	339	354	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.94E-22	341	383	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MGSYMNFKNV ADTPQLESNG GKSIGNGDFP LARQSSIYSL TFDELQTTFS GLGKDFGSIN 60 MEELLKSIWT AEESQAVTSS TGGGGDGNAP VGNLQRQGSL TLPRTLSQKT VDEVWRNFQK 120 ETTVCTKDGS DTGKSNFGQR QSTLGEMTLE EFLVKAGVVG EDMQSTSNSS GITFNNGSSQ 180 QNNNNGFNIA FQQPTQNTGL LINQIAANNM LNVVDPTASQ QQQPQKQQPL FPKQTTVAFS 240 SPMQLSNNGH LASPRTRAPA VGMSSPSVNA NMAQGGVMGM TGFYNGVSPA KGGSPGNDFV 300 ARSNVDTSSL SPSPYAYSEG GRGRRSGSSL EKVVERRRRR MIKNRESAAR SRARKQAYTL 360 ELEAEVAKLK KINEELRKKQ AEIIENQKNQ LTDKRNMPRG YKLRCLRRTL TGPW*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MGSYMNFKNV ADTPQLESNG GKSIGNGDFP LARQSSIYSL TFDELQTTFS GLGKDFGSIN  60
MEELLKSIWT AEESQAVTSS TGGGGDGNAP VGNLQRQGSL TLPRTLSQKT VDEVWRNFQK  120
ETTVCTKDGS DTGKSNFGQR QSTLGEMTLE EFLVKAGVVG EDMQSTSNSS GITFNNGSSQ  180
QNNNNGFNIA FQQPTQNTGL LINQIAANNM LNVVDPTASQ QQQPQKQQPL FPKQTTVAFS  240
SPMQLSNNGH LASPRTRAPA VGMSSPSVNA NMAQGGVMGM TGFYNGVSPA KGGSPGNDFV  300
ARSNVDTSSL SPSPYAYSEG GRGRRSGSSL EKVVERRRRR MIKNRESAAR SRARKQAYTL  360
ELEAEVAKLK KINEELRKKQ AEIIENQKNQ LTDKRNMPRG YKLRCLRRTL TGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044913

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF442268	0.0	KF442268.1 Solanum nigrum abscisic acid-insensitive 5-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346411.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
Swissprot	Q9M7Q2	9e-98	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	M1CFV6	0.0	M1CFV6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066603	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	5e-79	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044913
Entrez Gene	102591655

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]