PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045084
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 174aa    MW: 19762.6 Da    PI: 11.1078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045084genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.9e-124790248
                   AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48
                          +y GVr++  +g + AeIrdp     k +r +lg++ t ++Aa a+++
  PGSC0003DMP400045084 47 RYIGVRRRQ-WGTFTAEIRDP---DrKGARLWLGTYETLKDAALAYDR 90
                          699***887.**********8...3245******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-74790IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1547100IPR016177DNA-binding domain
CDDcd000185.98E-1947101No hitNo description
Gene3DG3DSA:3.30.730.101.9E-2147100IPR001471AP2/ERF domain
SMARTSM003809.2E-2047105IPR001471AP2/ERF domain
PROSITE profilePS5103217.02947107IPR001471AP2/ERF domain
PRINTSPR003671.4E-64859IPR001471AP2/ERF domain
PRINTSPR003671.4E-67187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNLSNVELPN SPNSSLGTSS SIKSKEEIIK GPMVVAREEN AWRDWRRYIG VRRRQWGTFT  60
AEIRDPDRKG ARLWLGTYET LKDAALAYDR GSKARVNFPH LIGSNMPKPA RLTVRHRTRS  120
PKPSAISSTS SENGTRKRKI DLINSIAKTN FFCHSYLKGR EFSVQILEKY LPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1846105469ATERF1
3gcc_A2e-1846105469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045084
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754405e-62HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769870.11e-71ethylene-responsive transcription factor 2-like
SwissprotQ404795e-31ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLM1CGB21e-125M1CGB2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000668531e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-27ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]