PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045143
Common NameLOC102582633
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 331aa    MW: 36874.2 Da    PI: 6.0305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045143genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002189211123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+k+F++   L  H  +H
  PGSC0003DMP400045143 189 YRCETCNKVFRSYQALGGHRASH 211
                           9***********99999998887 PP
2zf-C2H2120.00066236258123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp C ++F++   L  H r+H
  PGSC0003DMP400045143 236 HQCPVCYRVFPSGQALGGHKRSH 258
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.89527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787527IPR007087Zinc finger, C2H2
PfamPF139125.8E-6628IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SMARTSM003550.014189211IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-12189213IPR007087Zinc finger, C2H2
SuperFamilySSF576679.91E-9189258No hitNo description
PROSITE profilePS5015710.325189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SMARTSM003550.091236258IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369236259IPR007087Zinc finger, C2H2
PfamPF139127.4E-13236258IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEKNKICKLC SRKFANGRAL GGHMRSHMMN LQLHQHETES IPSSSWSDEE EKGKILNSSD  60
ADADADADDS AVVLPDKESE TESSKNPIRF KRSKRVRKSR KPNFVKITEY YSSVVETEPV  120
SSISENSPEE DVAHCLMMLS RDKWNKKEQV DFYSDEEEED EQVKEENSED SEGGEVKVTT  180
KSTRGRGKYR CETCNKVFRS YQALGGHRAS HKKIKLSNEV VESARNNNVV VEEKIHQCPV  240
CYRVFPSGQA LGGHKRSHTI GAVVATSVTV LPPLPPPPAP AKLELSRTGG TSLIDLNFPP  300
PMEDDDEIIS QVEVSAVSDA EFVNPIKNQR *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347910.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLM1CGE90.0M1CGE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000669390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-55C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]