PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045152
Common NameLOC102584615
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 261aa    MW: 29182.9 Da    PI: 6.8326
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045152genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18167201135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  PGSC0003DMP400045152 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 201
                           *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-831252IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.102.4E-14160198IPR013088Zinc finger, NHR/GATA-type
SMARTSM004018.2E-16161211IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503161197IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-15162225No hitNo description
CDDcd002028.20E-14166213No hitNo description
PfamPF003206.9E-16167201IPR000679Zinc finger, GATA-type
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDVYGVHSAP DLFRIDDLLD FSNDEIFSIN NNSSNTDCNH HHQPHSHNSS AAGAANYYDA  60
LLPNSSDDFT DNLCVPSDDV AELEWLSNFV EDSFSNFPAN SVTGTMNISS NTASFHGRSR  120
SKRSRSTSSW TSSLQNTNAT TSMKNKESSV YTRERSSSMD EDVPRRCTHC ASEKTPQWRT  180
GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTQHSN SHRKVMELRR QKEAIHQPQQ  240
QQQMLPSTEE GMYGHHFRVC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347916.10.0PREDICTED: GATA transcription factor 4
SwissprotO497415e-75GATA2_ARATH; GATA transcription factor 2
TrEMBLM1CGF50.0M1CGF5_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000669530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.16e-68GATA transcription factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]